X-ray Laboratory

CCB's X-ray Laboratory provides access to state-of-the-art equipment and technologies, hosts a crystallography course and X-ray diffraction application training, and offers advice and technical assistance in crystal growth, data collection, and structure refinement.

 

All Harvard affiliates and external users are welcome. For more information, view our brochure.

 

Instrumentation & Services

Small Molecule Single Crystal Diffraction

Small Molecule Single Crystal DiffractionOur facility has a Bruker D8 VENTURE equipped with PHOTON-100 CMOS detector, high brilliance Mo/Cu IµS microfocus X-ray sources, and Oxford Cryosystream 800 series low temperature device.

And two APEX DUO single crystal diffractometers equipped with APEX II CCD detector, Mo (Triumph)/Cu (IµS microfocus) X-ray sources, and Oxford Cryosystream 700 series low temperature device.

 

Our facility provides routine small molecule (up to 500 non-hydrogen atoms) crystal structure determinations (80-400 K), including determinations of the absolute configuration of biologically active compounds, which often do not contain atoms with larger resonant scattering signals than that of oxygen.

And, we can also collect transmission-mode (in capillaries) powder diffraction data (80-400 K).

The Advanced Photon Source (APS) Argonne National Lab regularly awards our Lab beam time for micro-crystallography studies and resonant diffraction studies. Our X-ray laboratory has been using advanced crystallography as an essential research tool for:

 

X-ray Diffraction for Thin Film and Powder Samples

A photo of the Bruker D2 PHASER instrumentOur facility also has a Bruker D2 PHASER, a novel desktop X-ray diffraction tool enabling fast data collection for phase identification and Rietveld refinement.

And a D8 DISCOVER with DAVINCI Design X-ray powder diffractometer equipped with a zero/one-dimensional LynxEye detector and a two-dimensional VÅNTEC-500 detector.

It is capable of performing:

  • Qualitative and quantitative phase analysis by using Bragg-Brentano focusing with LynxEye geometry;
  • High-resolution X-ray diffraction and X-ray reflectivity (HRXRD/XRR) analysis of thin-film samples by using Göbel mirror/ACC2 with LynxEye geometry;
  • Stress measurement, texture analysis and non-destructive phase identification on the sample with even only 0.5 mm diameter area by using 2D X-ray diffraction (XRD2) with VÅNTEC-500 geometry.

 

Crystal Mounting

Zeiss MicroscopesOur facility has two Zeiss SteREO Discovery V8 microscopes for routine mounting of samples, configured with transmitted light polarization optics or AxioCam ERc5s Color CCD with AxioVision software.

And, we handle temperature and/or air sensitive crystals with a variety of techniques, many of which are detailed in the paper, "Macromolecular cryocrystallography—methods for cooling and mounting protein crystals at cryogenic temperatures". You can either supply your own properly mounted crystals or have the laboratory director mount the crystals for you.

 

Plan Your Visit

Small-Molecule Crystallography Service

Single crystal quality is perhaps the most important factor in determining the final precision for a given X-ray structural investigation. High precision structural results require high-quality crystals. In general, crystals for an X-ray study must be single and of the proper size and shape. The crystal can usually be analyzed in-house if they are at least 0.02 mm thick in two dimensions. If we cannot collect reasonable resolution data for micro-sized crystals, we can analyze them with synchrotron radiation at the Advanced Photon Source.

Please submit a request form (available below or in the laboratory):

Guidelines

Data collection and structure determinations are performed on a first-come, first-serve basis. If you are preparing a highly unstable material, please make arrangements ahead of time with the laboratory director. When a structure is considered final and complete, all necessary data (cif, tables, Ortep, etc.) will be sent to the user and his/her group advisor. The user is responsible for safekeeping his/her own released data

Become a DIY user

The X-ray facility strongly encourages user participation in structure determination and refinement and graphics interaction of molecular structure determinations. Users who wish to participate in single-crystal structure determination, powder sample measurement and thin films analysis (DIY users) may do so after:

Diffractometer Reservation

To reserve for single-crystal diffraction, contact the laboratory director, Shao-Liang Zheng. 

To reserve for powder diffraction, apply for a FAS RC account and inform the laboratory director, Shao-Liang Zheng, of the email address you used to sign up. Please contact rchelp@fas.harvard.edu if you run into technical issues.

 

Policies

Our Laboratory follows Harvard's Academic Service Center Policy. The external users also need to submit the External User Intake Form, required by CCB Finance Team. Contact Liz Bean and CCB Finance Team if you have further questions regarding the billing.

COVID-Operating Policy

Currently, we are approved to open our facility to DIY users as long as the users participate in the University's testing program and wear masks. Contact the laboratory director, Shao-Liang Zheng, with questions.

Co-Authorship and Acknowledgements

The laboratory director can help complete X-ray components of experiments and review the manuscript.

The director should be considered for co-authorship if:

  • The structural information that has been derived mainly from the diffraction data is an important part of the paper, and/or 
  • The structure determination is non-routine, such as photocrystallographic studies, and/or
  • The final structure involved a substantial amount of time and technical expertise, such as problematic twinning or whole-molecule disorder structure refinement.

An acknowledgment is more appropriate if structure determination was used only to confirm information obtained by other means (NMR, MS, etc.) and no structural details will be given in the paper. For example, "We thank Dr. Shao-Liang Zheng for his help with the X-ray data collection and structure determination."

We also request acknowledgement if your data are collected at the Sector 15, Advanced Photon Source (APS): "NSF’s ChemMatCARS Sector 15 is supported by the Divisions of Chemistry (CHE) and Materials Research (DMR), National Science Foundation, under grant number NSF/CHE- 1834750. Use of the Advanced Photon Source, an Office of Science User Facility operated for the U.S. Department of Energy (DOE) Office of Science by Argonne National Laboratory, was supported by the U.S. DOE under Contract No. DE-AC02-06CH11357.” 

For X-ray diffraction data collected on D8 DISCOVER with DAVINCI Design, you need only write: Authors are grateful for the assistance of Dr. Shao-Liang Zheng with the X-ray analysis.

 

Education and Outreach

We welcome students from all levels—high school, undergraduate, graduate and post-graduate—to our X-ray laboratory. Visitors learn about X-ray science and instrumentation through hands-on activities. To schedule your visit, please contact the laboratory director, Shao-Liang Zheng.

Chemistry 255. Practical Crystallography in Chemistry and Materials Science

Due to great technical advances, crystal structure analysis plays an increasingly important role in the structure determination of complex solids. This course involves the basic principles of crystallography and covers advanced aspects of practical crystal structure refinement. Topics include: crystal symmetry, space groups, geometry of diffraction, structure factors, and structure refinement. Students gain a working knowledge of X-ray crystallographic techniques, including how to: grow quality crystals, collect data, reduce data, determine a structure, visualize structure, utilize structural databases, publish crystallographic results. Course-related Video

Related Publications

 

Other Resources

Cambridge Structural Database (CSD)
The CSD contains bibliographic, 2D chemical and 3D structural results for organic and metal-organic compounds studied by X-ray or neutron diffraction. Any Harvard campus user can access the database from WebCSD, or install CSD software suites locally by contacting Tina Qin, the Librarian for Chemical Sciences for assessing detail

Powder Diffraction FileTM (PDF)
The PDF-2 can be accessed on the computers in X-ray center. PDF-2 is a collaborative product between ICDD, FIZ Kalsruhe, and NIST, and contains 250,182 unique material data sets.